PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000131G1260
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 228aa    MW: 24244.9 Da    PI: 4.8183
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000131G1260genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.29.5e-1949100154
              AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkle 54 
                      + ++GVr++ + grWv+e+r+p   g +  r +lg+f+taeeAa+a++aa++++ 
  PH01000131G1260  49 PVFRGVRRRGNAGRWVCEVRVP---GrRGCRLWLGTFDTAEEAARAHDAAMLAIA 100
                      579******************9...6445**********************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.1E-1449101IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-1950111IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-2850111IPR001471AP2/ERF domain
PROSITE profilePS5103221.28550109IPR001471AP2/ERF domain
SMARTSM003803.4E-2050115IPR001471AP2/ERF domain
CDDcd000183.34E-2251111No hitNo description
PRINTSPR003671.2E-55162IPR001471AP2/ERF domain
PRINTSPR003671.2E-57591IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MCLIKKEMSG ESGSPCSPAS TSSLEHQTVW TSSPKRPAGR TKFRETRHPV FRGVRRRGNA  60
GRWVCEVRVP GRRGCRLWLG TFDTAEEAAR AHDAAMLAIA GRGACLNFAD SAWLLAVPAS  120
YSSLADVRHA VAKAVEDFQR REALAEDALS ATSSTSSSPT DDDAATADES SSPAEDTPSD  180
LDVLSDMGWD LYYASLAQGM LMEPPSAAAA FGDDGDANLA VVPLWSY*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT2034831e-124KT203483.1 Paspalum vaginatum clone Sp26 hypothetical protein mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957403.11e-111PREDICTED: dehydration-responsive element-binding protein 1A-like
SwissprotQ64MA11e-111DRE1A_ORYSJ; Dehydration-responsive element-binding protein 1A
TrEMBLK3ZWL61e-111K3ZWL6_SETIT; Uncharacterized protein
STRINGSi030998m1e-111(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.11e-32C-repeat/DRE binding factor 2